Research

Alternative splicing

Identifying targets and regulatory patterns in short-read RNA-seq

Alternative polyadenylation

Genome-wide characterization of 3' end diversity

RNA–protein binding

Mapping protein interactions across the transcriptome

Google Scholar

List of publications on Google Scholar
Software

expressRNA

Transcriptomics bioinformatics platform

microbeAtlas

Microbes on the web

pubScan

Co-authorship networks from PubMed data

splicekit

Platform for differential splicing analysis

scanRBP

Scanning for RNA-binding protein motifs

pybio

Genome acrobatics, in Python
Latest on Bluesky
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Writing
2026‑09
Running, Woodway and FTMS
Getting treadmill runs into Strava by talking to a Woodway console over Bluetooth FTMS.
2026‑08
Goodbye Couchsurfing, welcome Couchers
Why Couchsurfing's rebuild broke everything, and why Couchers feels like a better home.
2026‑05
Save the sauna, or: how not to become a robot
On losing a university sauna, and what it says about optimization culture.
2025‑12
Start webdev with Python, Apache and Docker
A from-scratch introduction to building simple web apps.
2025‑05
pubScan co-authorship networks
Visualizing scientific co-authorship networks at PubMed scale.
2024‑12
Whats out there: 365 days = 365 posts
A year-long experiment in daily social media posting.
2023‑01
splicekit: a splicing analysis platform
A platform for differential splicing analysis of RNA-seq data.
2022‑07
Erich Fromm: To Have or to Be?
Visiting Muralto, and reflecting on Fromm's philosophy.
2022‑01
Mysql insert binary data from TAB files
Storing compressed JSON blobs in a MySQL database.
2021‑08
Fifth-metatarsal fracture, a transformative lesson
A year after a foot fracture — on mobility and recovery.
2021‑05
Javascript href, onclick and command-click
Handling href and onclick so command-click still works.
Philosophy
The truth is rarely pure and never simple.
Life through poems.
Notes
Short code notes: IT stuff I use and re-use.